{% set num_raw_reads = stats.seq.all_read_groups.raw.num_reads_r1 + stats.seq.all_read_groups.raw.num_reads_r2 %} {% set num_proc_reads = stats.seq.all_read_groups.proc.num_reads_r1 + stats.seq.all_read_groups.proc.num_reads_r2 %}

Sequencing Results

Table 3 | Combined reads statistics

Metric R1 R2 R1 + R2
# Raw reads {{ stats.seq.all_read_groups.raw.num_reads_r1|show_int }} {{ stats.seq.all_read_groups.raw.num_reads_r2|show_int }} {{ num_raw_reads|show_int }}
# Processed reads {{ stats.seq.all_read_groups.proc.num_reads_r1|show_int }} {{ stats.seq.all_read_groups.proc.num_reads_r2|show_int }} {{ num_proc_reads|show_int }}
% Retained reads n/a n/a {{ num_proc_reads|show_pct(num_raw_reads) }}

Table 4 | Per read group statistics

{% for rgs in stats.seq.per_read_group %} {% endfor %}
Read Group Raw Processed
R1 R2 R1 R2
#Reads %GC #Reads %GC #Reads %GC #Reads %GC
{{ rgs.name }} {{ rgs.raw.num_reads_r1|show_int }} {{ rgs.raw.pct_gc_r1 }} {{ rgs.raw.num_reads_r2|show_int }} {{ rgs.raw.pct_gc_r2 }} {{ rgs.proc.num_reads_r1|show_int }} {{ rgs.proc.pct_gc_r1 }} {{ rgs.proc.num_reads_r2|show_int }} {{ rgs.proc.pct_gc_r2 }}