PROTEIN PROFILES

Protein profile generation and searching

Program name	Description
profit	Scan one or more sequences with a simple frequency matrix
prophecy	Create frequency matrix or profile from a multiple alignment
prophet	Scan one or more sequences with a Gribskov or Henikoff profile
seqsearch	Generate PSI-BLAST hits (DHF file) from a DAF file
siggen	Generate a sparse protein signature from an alignment
siggenlig	Generate ligand-binding signatures from a CON file
sigscan	Generate hits (DHF file) from a signature search
sigscanlig	Search ligand-signature library and writes hits (LHF file)