LOCUS       AY687361                3768 bp    RNA     linear   VRL 21-JUL-2006
DEFINITION  SARS coronavirus B029 spike glycoprotein gene, complete cds.
ACCESSION   AY687361
VERSION     AY687361.1
KEYWORDS    .
SOURCE      SARS coronavirus B029
  ORGANISM  SARS coronavirus B029
            Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae;
            Orthocoronavirinae; Betacoronavirus; Sarbecovirus.
REFERENCE   1  (bases 1 to 3768)
  AUTHORS   Kan,B., Wang,M., Jing,H., Xu,H., Jiang,X., Yan,M., Liang,W.,
            Zheng,H., Wan,K., Liu,Q., Cui,B., Xu,Y., Zhang,E., Wang,H., Ye,J.,
            Li,G., Li,M., Cui,Z., Qi,X., Chen,K., Du,L., Gao,K., Zhao,Y.T.,
            Zou,X.Z., Feng,Y.J., Gao,Y.F., Hai,R., Yu,D., Guan,Y. and Xu,J.
  TITLE     Molecular evolution analysis and geographic investigation of severe
            acute respiratory syndrome coronavirus-like virus in palm civets at
            an animal market and on farms
  JOURNAL   J. Virol. 79 (18), 11892-11900 (2005)
   PUBMED   16140765
  REMARK    Erratum:[J Virol. 2006 Aug;80(15):7786]
REFERENCE   2  (bases 1 to 3768)
  AUTHORS   Xu,J., Kan,B., Yan,M., Liang,W., Zheng,H., Xu,Y., Wang,H., Li,G.,
            Ye,J., Li,M. and Zhang,E.
  TITLE     Characterization of SARS coronavirus from animals in Southern China
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 3768)
  AUTHORS   Xu,J., Kan,B., Yan,M. and Liang,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2004) Diarrhea Department, Institute for
            Communicable Disease Control and Prevention, PO Box 5, Changping,
            Beijing 102206, China
FEATURES             Location/Qualifiers
     source          1..3768
                     /organism="SARS coronavirus B029"
                     /mol_type="genomic RNA"
                     /isolation_source="palm civets"
                     /db_xref="taxon:305408"
     CDS             1..3768
                     /codon_start=1
                     /product="spike glycoprotein"
                     /protein_id="AAV97991.1"
                     /translation="MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPD
                     EIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWV
                     FGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFVVSKPMGTQTHTMIFDNAFNCT
                     FEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKP
                     IFKLPLGIKITNFRAILTAFSPAQGTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAV
                     DCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKF
                     PSVYAWERKRISNCVADYSVLYNSTSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGD
                     DVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRP
                     FERDISNVPFSSDGKPCTPPAPNCYWPLRGYGFYTTSGIGYQPYRVVVLSFELLNAPA
                     TVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPK
                     TSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTLIHAEQLTPAWRIYST
                     GNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSSLRSTSQKSIVAYTMSLG
                     ADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGS
                     FCRQLNRALSGIAAEQDRNTREVFVQVKQMYKTPTLKDFGGFNFSQILPDPLKPTKRS
                     FIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYT
                     AALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAIS
                     QIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE
                     VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH
                     LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQ
                     RNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDV
                     DLGDISGINASVVNIQEEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIA
                     GLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT"
ORIGIN      
        1 atgtttattt tcttattatt tcttactctc actagtggta gtgaccttga ccggtgcacc
       61 acttttgatg atgttcaagc tcctaattac actcaacata cttcatctat gaggggggtt
      121 tactatcctg atgaaatttt tagatcagac actctttatt taactcagga tttatttctt
      181 ccattttatt ctaatgttac agggtttcat actattaatc atacgtttga caaccctgtc
      241 atacctttta aggatggtat ttattttgct gccacagaga aatcaaatgt tgtccgtggt
      301 tgggtttttg gttctaccat gaacaacaag tcacagtcgg tgattattat taacaattct
      361 actaatgttg ttatacgagc atgtaacttt gaattgtgtg acaacccttt ctttgttgtt
      421 tctaaaccca tgggtacaca gacacatact atgatattcg ataatgcatt taattgcact
      481 ttcgagtaca tatctgatgc cttttcgctt gatgtttcag aaaagtcagg taattttaaa
      541 cacttacgag agtttgtgtt taaaaataaa gatgggtttc tctatgttta taagggctat
      601 caacctatag atgtagttcg tgatctacct tctggtttta acactttgaa acctattttt
      661 aagttgcctc ttggtattaa gattacaaat tttagagcca ttcttacagc cttttcacct
      721 gctcaaggca cttggggcac gtcagctgca gcctattttg ttggctattt aaagccaact
      781 acatttatgc tcaagtatga tgaaaatggt acaatcacag atgctgttga ttgttctcaa
      841 aatccacttg ctgaactcaa atgctctgtt aagagctttg agattgacaa aggaatttac
      901 cagacctcta atttcagggt tgttccctca ggagatgttg tgagattccc taatattaca
      961 aacttgtgtc cttttggaga ggtttttaat gctactaaat tcccttctgt ctatgcatgg
     1021 gagaggaaaa gaatttctaa ttgtgttgct gattactctg tgctctacaa ctcaacatct
     1081 ttttcaacct ttaagtgcta tggcgtttct gccactaagt tgaatgatct ttgcttctcc
     1141 aatgtctatg cagattcttt tgtagtcaag ggagatgatg taagacaaat agcgccagga
     1201 caaactggtg ttattgctga ttataattat aaattgccag atgatttcat gggttgtgtc
     1261 cttgcttgga atactaggaa cattgatgct acttcaactg gtaattataa ttataaatat
     1321 aggtatctta gacatggcaa gcttaggccc tttgagagag acatatctaa tgtgcctttc
     1381 tcttctgatg gcaaaccttg caccccacct gctcctaatt gttattggcc attaagaggt
     1441 tatggttttt acaccactag tggcattggc taccaacctt acagagttgt agtactttct
     1501 tttgaacttt taaatgcacc ggccacggtt tgtggaccaa aattatccac tgaccttatt
     1561 aagaaccagt gtgtcaattt taattttaat ggactcactg gtactggtgt gttaactcct
     1621 tcttcaaaga gatttcaacc atttcaacaa tttggccgtg atgtttctga tttcactgat
     1681 tccgttcgag atcctaaaac atctgaaata ttagacattt caccttgctc ttttgggggt
     1741 gtaagtgtaa ttacacctgg aacaaatgct tcatctgaag ttgctgttct atatcaagat
     1801 gttaactgca ctgatgtttc tacattaatt catgcagaac aactcacacc agcttggcgc
     1861 atatattcta ctggaaacaa tgtattccag actcaagcag gctgtcttat aggagctgag
     1921 catgtcgaca cttcttatga gtgcgacatt cctattggag ctggcatttg tgctagttac
     1981 catacagttt cttcattacg tagtactagc caaaaatcta ttgtggctta tactatgtct
     2041 ttaggtgctg atagttcaat tgcttactct aataacacca ttgctatacc tactaacttt
     2101 tcaattagca ttactacaga agtaatgcct gtttctatgg ctaaaacctc cgtagattgt
     2161 aatatgtaca tctgcggaga ttctactgaa tgtgctaatt tgcttctcca atatggtagc
     2221 ttttgcagac aactaaatcg tgcactctca ggtattgctg ctgaacagga tcgcaacaca
     2281 cgtgaagtgt tcgttcaagt caaacaaatg tacaaaaccc caactttgaa agattttggt
     2341 ggttttaatt tttcacaaat attacctgac cctctaaagc caactaagag gtcttttatt
     2401 gaggacttgc tctttaataa ggtgacactc gctgatgctg gcttcatgaa gcaatatggc
     2461 gaatgcctag gtgatattaa tgctagagat ctcatttgtg cgcagaagtt caatggactt
     2521 acagtgttgc cacctctgct cactgatgat atgattgctg cctacactgc tgctctagtt
     2581 agtggtactg ccactgctgg atggacattt ggtgctggcg ctgctcttca aatacctttt
     2641 gctatgcaaa tggcatatag gttcaatggc attggagtta cccaaaatgt tctctatgag
     2701 aaccaaaaac aaatcgccaa ccaatttaac aaggcgatta gtcaaattca agaatcactt
     2761 acaacaacat caactgcatt gggcaagctg caagacgttg ttaaccagaa tgctcaagca
     2821 ttaaacacac ttgttaaaca acttagctct aattttggtg caatttcaag tgtgctaaat
     2881 gatatccttt cgcgacttga taaagtcgag gcggaggtac aaattgacag gttaattaca
     2941 ggcagacttc aaagccttca aacctatgta acacaacaac taatcagggc tgctgaaatc
     3001 agggcttctg ctaatcttgc tgctactaaa atgtctgagt gtgttcttgg acaatcaaaa
     3061 agagttgact tttgcggaaa gggctaccac cttatgtcct tcccacaagc agccccgcat
     3121 ggtgttgtct tcctacatgt cacgtatgtg ccatcccagg agaggaactt caccacagcg
     3181 ccagcaattt gtcatgaagg caaagcatac ttccctcgtg aaggtgtttt tgtgtttaat
     3241 ggcacttctt ggtttattac acagaggaac ttcttttctc cacaaataat tactacagac
     3301 aatacatttg tctcaggaaa ttgtgatgtc gttattggca tcattaacaa cacagtttat
     3361 gatcctctgc aacctgagct tgactcattc aaagaagagc tggacaagta cttcaaaaat
     3421 catacatcac cagatgttga tcttggcgac atttcaggca ttaacgcttc tgtcgtcaac
     3481 attcaagaag aaattgaccg cctcaatgag gtcgctaaaa atttaaatga atcactcatc
     3541 gaccttcaag aattgggaaa atatgagcaa tatattaaat ggccttggta tgtttggctc
     3601 ggcttcattg ctggactaat tgccatcgtc atggttacaa tcttgctttg ttgcatgact
     3661 agttgttgca gttgcctcaa gggtgcatgc tcttgtggtt cttgctgcaa gtttgatgag
     3721 gatgactctg agccagttct caagggtgtc aaattacatt acacataa
//

