tximeta-package |
Import transcript-level quantification data with automatic metadata |
addExons |
Add exons to rowRanges of a transcript-level SummarizedExperiment |
addIds |
Add IDs to rowRanges of a SummarizedExperiment |
getTximetaBFC |
Get or set the directory of the BiocFileCache used by tximeta |
linkedTxome |
Make and load linked transcriptomes ("linkedTxome") |
loadLinkedTxome |
Make and load linked transcriptomes ("linkedTxome") |
makeDGEList |
Make a DGEList from tximeta output |
makeLinkedTxome |
Make and load linked transcriptomes ("linkedTxome") |
retrieveDb |
Retrieve the TxDb or EnsDb associated with a SummarizedExperiment |
setTximetaBFC |
Get or set the directory of the BiocFileCache used by tximeta |
splitSE |
Split SummarizedExperiment by gene categories |
summarizeToGene-method |
Summarize estimated quantitites to gene-level |
tximeta |
tximeta: Transcript quantification import with automatic metadata |