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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| README.md | 2020-06-13 03:22 | 194 | |
| a_sample_mt.sh | 2020-06-13 03:22 | 2.1K | |
| addadapters.sh | 2020-06-13 03:22 | 2.6K | |
| addssu.sh | 2020-06-13 03:22 | 2.2K | |
| adjusthomopolymers.sh | 2020-06-13 03:22 | 2.1K | |
| alltoall.sh | 2020-06-13 03:22 | 2.0K | |
| analyzeaccession.sh | 2020-06-13 03:22 | 1.4K | |
| analyzegenes.sh | 2020-06-13 03:22 | 1.4K | |
| analyzesketchresults.sh | 2020-06-13 03:22 | 2.2K | |
| applyvariants.sh | 2020-06-13 03:22 | 2.5K | |
| bbcms.sh | 2020-06-13 03:22 | 6.2K | |
| bbcountunique.sh | 2020-06-13 03:22 | 2.8K | |
| bbduk.sh | 2020-06-13 03:22 | 19K | |
| bbest.sh | 2020-06-13 03:22 | 1.4K | |
| bbfakereads.sh | 2020-06-13 03:22 | 2.9K | |
| bbmap.sh | 2020-06-13 03:22 | 20K | |
| bbmapskimmer.sh | 2020-06-13 03:22 | 1.1K | |
| bbmask.sh | 2020-06-13 03:22 | 4.4K | |
| bbmerge-auto.sh | 2020-06-13 03:22 | 1.2K | |
| bbmerge.sh | 2020-06-13 03:22 | 14K | |
| bbnorm.sh | 2020-06-13 03:22 | 9.8K | |
| bbrealign.sh | 2020-06-13 03:22 | 3.3K | |
| bbrename.sh | 2020-06-13 03:22 | 396 | |
| bbsketch.sh | 2020-06-13 03:22 | 456 | |
| bbsplit.sh | 2020-06-13 03:22 | 5.9K | |
| bbsplitpairs.sh | 2020-06-13 03:22 | 3.3K | |
| bbstats.sh | 2020-06-13 03:22 | 392 | |
| bbversion.sh | 2020-06-13 03:22 | 517 | |
| bbwrap.sh | 2020-06-13 03:22 | 2.0K | |
| bitbucket-pipelines.yml | 2020-06-13 03:22 | 594 | |
| bloomfilter.sh | 2020-06-13 03:22 | 3.7K | |
| build.xml | 2020-06-13 03:22 | 2.0K | |
| build_env_setup.sh | 2020-06-13 03:22 | 11K | |
| calcmem.sh | 2020-06-13 03:22 | 5.6K | |
| calctruequality.sh | 2020-06-13 03:22 | 5.6K | |
| callgenes.sh | 2020-06-13 03:22 | 2.3K | |
| callpeaks.sh | 2020-06-13 03:22 | 2.3K | |
| callvariants.sh | 2020-06-13 03:22 | 8.9K | |
| callvariants2.sh | 2020-06-13 03:22 | 1.4K | |
| clumpify.sh | 2020-06-13 03:22 | 11K | |
| commonkmers.sh | 2020-06-13 03:22 | 1.8K | |
| comparegff.sh | 2020-06-13 03:22 | 1.1K | |
| comparesketch.sh | 2020-06-13 03:22 | 15K | |
| comparessu.sh | 2020-06-13 03:22 | 2.5K | |
| comparevcf.sh | 2020-06-13 03:22 | 2.2K | |
| conda_build.sh | 2020-06-13 03:22 | 379 | |
| config/ | 2020-08-20 00:58 | - | |
| consect.sh | 2020-06-13 03:22 | 1.9K | |
| consensus.sh | 2020-06-13 03:22 | 3.3K | |
| countbarcodes.sh | 2020-06-13 03:22 | 2.3K | |
| countgc.sh | 2020-06-13 03:22 | 1.2K | |
| countsharedlines.sh | 2020-06-13 03:22 | 2.1K | |
| crossblock.sh | 2020-06-13 03:22 | 147 | |
| crosscontaminate.sh | 2020-06-13 03:22 | 2.9K | |
| current/ | 2020-08-20 00:58 | - | |
| cutgff.sh | 2020-06-13 03:22 | 2.9K | |
| cutprimers.sh | 2020-06-13 03:22 | 2.0K | |
| decontaminate.sh | 2020-06-13 03:22 | 4.9K | |
| dedupe.sh | 2020-06-13 03:22 | 8.9K | |
| dedupe2.sh | 2020-06-13 03:22 | 1.3K | |
| dedupebymapping.sh | 2020-06-13 03:22 | 2.5K | |
| demuxbyname.sh | 2020-06-13 03:22 | 7.3K | |
| diskbench.sh | 2020-06-13 03:22 | 1.8K | |
| docs/ | 2020-08-20 00:58 | - | |
| estherfilter.sh | 2020-06-13 03:22 | 1.3K | |
| explodetree.sh | 2020-06-13 03:22 | 1.6K | |
| fetchproks.sh | 2020-06-13 03:22 | 1.9K | |
| filterassemblysummary.sh | 2020-06-13 03:22 | 3.1K | |
| filterbarcodes.sh | 2020-06-13 03:22 | 2.7K | |
| filterbycoverage.sh | 2020-06-13 03:22 | 2.6K | |
| filterbyname.sh | 2020-06-13 03:22 | 3.7K | |
| filterbysequence.sh | 2020-06-13 03:22 | 2.4K | |
| filterbytaxa.sh | 2020-06-13 03:22 | 3.9K | |
| filterbytile.sh | 2020-06-13 03:22 | 4.4K | |
| filterlines.sh | 2020-06-13 03:22 | 2.5K | |
| filterqc.sh | 2020-06-13 03:22 | 1.9K | |
| filtersam.sh | 2020-06-13 03:22 | 2.6K | |
| filtersilva.sh | 2020-06-13 03:22 | 1.5K | |
| filtersubs.sh | 2020-06-13 03:22 | 1.5K | |
| filtervcf.sh | 2020-06-13 03:22 | 3.6K | |
| fixgaps.sh | 2020-06-13 03:22 | 2.3K | |
| fungalrelease.sh | 2020-06-13 03:22 | 2.7K | |
| fuse.sh | 2020-06-13 03:22 | 2.4K | |
| gbff2gff.sh | 2020-06-13 03:22 | 846 | |
| getreads.sh | 2020-06-13 03:22 | 1.2K | |
| gi2ancestors.sh | 2020-06-13 03:22 | 1.8K | |
| gi2taxid.sh | 2020-06-13 03:22 | 3.0K | |
| gitable.sh | 2020-06-13 03:22 | 1.9K | |
| grademerge.sh | 2020-06-13 03:22 | 971 | |
| gradesam.sh | 2020-06-13 03:22 | 1.6K | |
| icecreamfinder.sh | 2020-06-13 03:22 | 6.0K | |
| icecreamgrader.sh | 2020-06-13 03:22 | 1.0K | |
| icecreammaker.sh | 2020-06-13 03:22 | 3.6K | |
| idmatrix.sh | 2020-06-13 03:22 | 2.3K | |
| idtree.sh | 2020-06-13 03:22 | 1.7K | |
| invertkey.sh | 2020-06-13 03:22 | 1.6K | |
| jni/ | 2020-08-20 00:58 | - | |
| kapastats.sh | 2020-06-13 03:22 | 1.6K | |
| kcompress.sh | 2020-06-13 03:22 | 3.4K | |
| keepbestcopy.sh | 2020-06-13 03:22 | 2.0K | |
| khist.sh | 2020-06-13 03:22 | 1.1K | |
| kmercountexact.sh | 2020-06-13 03:22 | 5.7K | |
| kmercountmulti.sh | 2020-06-13 03:22 | 2.6K | |
| kmercoverage.sh | 2020-06-13 03:22 | 4.0K | |
| kmerfilterset.sh | 2020-06-13 03:22 | 2.6K | |
| kmerlimit.sh | 2020-06-13 03:22 | 2.5K | |
| kmerlimit2.sh | 2020-06-13 03:22 | 2.6K | |
| kmerposition.sh | 2020-06-13 03:22 | 1.8K | |
| license.txt | 2020-06-13 03:22 | 2.4K | |
| lilypad.sh | 2020-06-13 03:22 | 2.6K | |
| loadreads.sh | 2020-06-13 03:22 | 1.5K | |
| loglog.sh | 2020-06-13 03:22 | 2.3K | |
| makechimeras.sh | 2020-06-13 03:22 | 1.8K | |
| makecontaminatedgenomes.sh | 2020-06-13 03:22 | 2.2K | |
| makepolymers.sh | 2020-06-13 03:22 | 2.1K | |
| mapPacBio.sh | 2020-06-13 03:22 | 1.7K | |
| matrixtocolumns.sh | 2020-06-13 03:22 | 1.5K | |
| mergeOTUs.sh | 2020-06-13 03:22 | 1.0K | |
| mergebarcodes.sh | 2020-06-13 03:22 | 2.5K | |
| mergepgm.sh | 2020-06-13 03:22 | 1.3K | |
| mergeribo.sh | 2020-06-13 03:22 | 3.3K | |
| mergesam.sh | 2020-06-13 03:22 | 1.0K | |
| mergesketch.sh | 2020-06-13 03:22 | 2.9K | |
| mergesorted.sh | 2020-06-13 03:22 | 2.8K | |
| metadata_conda_debug.yaml | 2020-06-13 03:22 | 1.4K | |
| msa.sh | 2020-06-13 03:22 | 2.5K | |
| mutate.sh | 2020-06-13 03:22 | 3.3K | |
| muxbyname.sh | 2020-06-13 03:22 | 2.1K | |
| partition.sh | 2020-06-13 03:22 | 2.1K | |
| phylip2fasta.sh | 2020-06-13 03:22 | 1.7K | |
| pileup.sh | 2020-06-13 03:22 | 7.2K | |
| pipelines/ | 2020-08-20 00:58 | - | |
| plotflowcell.sh | 2020-06-13 03:22 | 2.7K | |
| plotgc.sh | 2020-06-13 03:22 | 1.8K | |
| postfilter.sh | 2020-06-13 03:22 | 2.7K | |
| printtime.sh | 2020-06-13 03:22 | 933 | |
| processfrag.sh | 2020-06-13 03:22 | 1.4K | |
| processhi-c.sh | 2020-06-13 03:22 | 2.0K | |
| processspeed.sh | 2020-06-13 03:22 | 926 | |
| pytools/ | 2020-08-20 00:58 | - | |
| randomgenome.sh | 2020-06-13 03:22 | 1.5K | |
| randomreads.sh | 2020-06-13 03:22 | 7.3K | |
| readlength.sh | 2020-06-13 03:22 | 1.5K | |
| readqc.sh | 2020-06-13 03:22 | 1.5K | |
| reducesilva.sh | 2020-06-13 03:22 | 1.9K | |
| reformat.sh | 2020-06-13 03:22 | 14K | |
| reformatpb.sh | 2020-06-13 03:22 | 5.0K | |
| removebadbarcodes.sh | 2020-06-13 03:22 | 1.8K | |
| removecatdogmousehuman.sh | 2020-06-13 03:22 | 2.5K | |
| removehuman.sh | 2020-06-13 03:22 | 2.5K | |
| removehuman2.sh | 2020-06-13 03:22 | 2.5K | |
| removemicrobes.sh | 2020-06-13 03:22 | 2.9K | |
| removesmartbell.sh | 2020-06-13 03:22 | 1.3K | |
| rename.sh | 2020-06-13 03:22 | 3.5K | |
| renameimg.sh | 2020-06-13 03:22 | 1.7K | |
| repair.sh | 2020-06-13 03:22 | 2.9K | |
| replaceheaders.sh | 2020-06-13 03:22 | 2.5K | |
| representative.sh | 2020-06-13 03:22 | 3.2K | |
| resources/ | 2020-08-20 00:58 | - | |
| rqcfilter.sh | 2020-06-13 03:22 | 393 | |
| rqcfilter2.sh | 2020-06-13 03:22 | 13K | |
| samtoroc.sh | 2020-06-13 03:22 | 1.9K | |
| seal.sh | 2020-06-13 03:22 | 11K | |
| sendsketch.sh | 2020-06-13 03:22 | 12K | |
| shred.sh | 2020-06-13 03:22 | 1.6K | |
| shrinkaccession.sh | 2020-06-13 03:22 | 1.7K | |
| shuffle.sh | 2020-06-13 03:22 | 2.3K | |
| shuffle2.sh | 2020-06-13 03:22 | 2.3K | |
| sketch.sh | 2020-06-13 03:22 | 6.5K | |
| sketchblacklist.sh | 2020-06-13 03:22 | 3.5K | |
| sketchblacklist2.sh | 2020-06-13 03:22 | 3.2K | |
| sortbyname.sh | 2020-06-13 03:22 | 2.8K | |
| splitbytaxa.sh | 2020-06-13 03:22 | 2.7K | |
| splitnextera.sh | 2020-06-13 03:22 | 3.7K | |
| splitribo.sh | 2020-06-13 03:22 | 2.4K | |
| splitsam.sh | 2020-06-13 03:22 | 1.0K | |
| splitsam4way.sh | 2020-06-13 03:22 | 1.0K | |
| splitsam6way.sh | 2020-06-13 03:22 | 1.0K | |
| stats.sh | 2020-06-13 03:22 | 3.8K | |
| statswrapper.sh | 2020-06-13 03:22 | 2.3K | |
| streamsam.sh | 2020-06-13 03:22 | 1.7K | |
| subsketch.sh | 2020-06-13 03:22 | 2.2K | |
| summarizecontam.sh | 2020-06-13 03:22 | 2.0K | |
| summarizecoverage.sh | 2020-06-13 03:22 | 1.4K | |
| summarizecrossblock.sh | 2020-06-13 03:22 | 1.7K | |
| summarizemerge.sh | 2020-06-13 03:22 | 1.0K | |
| summarizequast.sh | 2020-06-13 03:22 | 1.2K | |
| summarizescafstats.sh | 2020-06-13 03:22 | 1.6K | |
| summarizeseal.sh | 2020-06-13 03:22 | 2.1K | |
| summarizesketch.sh | 2020-06-13 03:22 | 1.3K | |
| synthmda.sh | 2020-06-13 03:22 | 2.4K | |
| tadpipe.sh | 2020-06-13 03:22 | 1.8K | |
| tadpole.sh | 2020-06-13 03:22 | 12K | |
| tadwrapper.sh | 2020-06-13 03:22 | 1.6K | |
| taxonomy.sh | 2020-06-13 03:22 | 3.1K | |
| taxserver.sh | 2020-06-13 03:22 | 3.9K | |
| taxsize.sh | 2020-06-13 03:22 | 1.5K | |
| taxtree.sh | 2020-06-13 03:22 | 1.6K | |
| testfilesystem.sh | 2020-06-13 03:22 | 1.0K | |
| testformat.sh | 2020-06-13 03:22 | 1.1K | |
| testformat2.sh | 2020-06-13 03:22 | 4.7K | |
| tetramerfreq.sh | 2020-06-13 03:22 | 2.0K | |
| textfile.sh | 2020-06-13 03:22 | 1.0K | |
| translate6frames.sh | 2020-06-13 03:22 | 2.7K | |
| unicode2ascii.sh | 2020-06-13 03:22 | 1.1K | |
| unzip.sh | 2020-06-13 03:22 | 1.3K | |
| vcf2gff.sh | 2020-06-13 03:22 | 891 | |
| webcheck.sh | 2020-06-13 03:22 | 1.8K | |