Index of /miniconda3/pkgs/bbmap-38.86-h1296035_0/opt/bbmap-38.86-0/current/jgi

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]Unzip.java2020-06-13 03:22 7.6K 
[ ]Unzip.class2020-06-13 03:22 6.4K 
[TXT]UnicodeToAscii.java2020-06-13 03:22 3.9K 
[ ]UnicodeToAscii.class2020-06-13 03:22 5.2K 
[TXT]TranslateSixFrames.java2020-06-13 03:22 13K 
[ ]TranslateSixFrames.class2020-06-13 03:22 13K 
[TXT]TetramerFrequencies.java2020-06-13 03:22 13K 
[ ]TetramerFrequencies.class2020-06-13 03:22 14K 
[ ]TetramerFrequencies$PrintThread.class2020-06-13 03:22 1.9K 
[ ]TetramerFrequencies$Line.class2020-06-13 03:22 867  
[TXT]TestFormat.java2020-06-13 03:22 38K 
[ ]TestFormat.class2020-06-13 03:22 32K 
[ ]TestFormat$TestThread.class2020-06-13 03:22 10K 
[ ]TestFormat$Barcode.class2020-06-13 03:22 1.7K 
[TXT]TestFilesystem.java2020-06-13 03:22 8.2K 
[ ]TestFilesystem.class2020-06-13 03:22 8.9K 
[ ]TestFilesystem$WriteThread.class2020-06-13 03:22 2.3K 
[TXT]SynthMDA.java2020-06-13 03:22 12K 
[ ]SynthMDA.class2020-06-13 03:22 12K 
[TXT]StringCount.java2020-06-13 03:22 1.0K 
[ ]StringCount.class2020-06-13 03:22 1.6K 
[TXT]SplitSamFile.java2020-06-13 03:22 2.3K 
[ ]SplitSamFile.class2020-06-13 03:22 2.8K 
[TXT]SplitSam6Way.java2020-06-13 03:22 4.7K 
[ ]SplitSam6Way.class2020-06-13 03:22 4.2K 
[TXT]SplitSam4Way.java2020-06-13 03:22 4.0K 
[ ]SplitSam4Way.class2020-06-13 03:22 4.0K 
[TXT]SplitPairsAndSingles.java2020-06-13 03:22 25K 
[ ]SplitPairsAndSingles.class2020-06-13 03:22 20K 
[TXT]SplitNexteraLMP.java2020-06-13 03:22 21K 
[ ]SplitNexteraLMP.class2020-06-13 03:22 21K 
[TXT]SmallKmerFrequency.java2020-06-13 03:22 5.3K 
[ ]SmallKmerFrequency.class2020-06-13 03:22 5.4K 
[ ]SmallKmerFrequency$NumComparator.class2020-06-13 03:22 1.0K 
[ ]SmallKmerFrequency$Kmer.class2020-06-13 03:22 1.0K 
[ ]SmallKmerFrequency$CountComparator.class2020-06-13 03:22 1.0K 
[TXT]Shred.java2020-06-13 03:22 12K 
[ ]Shred.class2020-06-13 03:22 12K 
[TXT]Seal.java2020-06-13 03:22 106K 
[ ]Seal.class2020-06-13 03:22 53K 
[ ]Seal$ProcessThread.class2020-06-13 03:22 24K 
[ ]Seal$LoadThread.class2020-06-13 03:22 6.7K 
[TXT]SamToEst.java2020-06-13 03:22 15K 
[ ]SamToEst.class2020-06-13 03:22 12K 
[ ]SamToEst$EST.class2020-06-13 03:22 2.4K 
[ ]SamToEst$1.class2020-06-13 03:22 379  
[TXT]RepresentativeSet.java2020-06-13 03:22 16K 
[ ]RepresentativeSet.class2020-06-13 03:22 14K 
[ ]RepresentativeSet$Node.class2020-06-13 03:22 2.6K 
[ ]RepresentativeSet$Edge.class2020-06-13 03:22 2.8K 
[TXT]ReplaceHeaders.java2020-06-13 03:22 15K 
[ ]ReplaceHeaders.class2020-06-13 03:22 11K 
[TXT]RenameReads.java2020-06-13 03:22 11K 
[ ]RenameReads.class2020-06-13 03:22 12K 
[TXT]RemoveBadBarcodes.java2020-06-13 03:22 1.9K 
[ ]RemoveBadBarcodes.class2020-06-13 03:22 2.4K 
[TXT]RemapQuality.java2020-06-13 03:22 2.6K 
[ ]RemapQuality.class2020-06-13 03:22 2.3K 
[TXT]ReformatReads.java2020-06-13 03:22 56K 
[ ]ReformatReads.class2020-06-13 03:22 46K 
[TXT]RedirectTest.java2020-06-13 03:22 1.7K 
[ ]RedirectTest.class2020-06-13 03:22 2.8K 
[TXT]ReadKmerDepthDistribution.java2020-06-13 03:22 36K 
[ ]ReadKmerDepthDistribution.class2020-06-13 03:22 29K 
[ ]ReadKmerDepthDistribution$ProcessThread.class2020-06-13 03:22 5.4K 
[ ]ReadKmerDepthDistribution$1.class2020-06-13 03:22 447  
[TXT]RandomGenome.java2020-06-13 03:22 6.2K 
[ ]RandomGenome.class2020-06-13 03:22 7.3K 
[TXT]RQCFilterStats.java2020-06-13 03:22 7.6K 
[ ]RQCFilterStats.class2020-06-13 03:22 7.2K 
[TXT]RQCFilter2.java2020-06-13 03:22 137K 
[ ]RQCFilter2.class2020-06-13 03:22 94K 
[TXT]PhylipToFasta.java2020-06-13 03:22 4.7K 
[ ]PhylipToFasta.class2020-06-13 03:22 5.7K 
[TXT]PartitionReads.java2020-06-13 03:22 14K 
[ ]PartitionReads.class2020-06-13 03:22 11K 
[TXT]Orf.java2020-06-13 03:22 2.5K 
[ ]Orf.class2020-06-13 03:22 3.4K 
[TXT]MutateGenome2.java2020-06-13 03:22 29K 
[ ]MutateGenome2.class2020-06-13 03:22 25K 
[ ]MutateGenome2$SmallVar.class2020-06-13 03:22 2.5K 
[TXT]MutateGenome.java2020-06-13 03:22 24K 
[ ]MutateGenome.class2020-06-13 03:22 22K 
[ ]MutateGenome$SmallVar.class2020-06-13 03:22 2.2K 
[TXT]MergeSam.java2020-06-13 03:22 5.4K 
[ ]MergeSam.class2020-06-13 03:22 5.9K 
[TXT]MergeBarcodes.java2020-06-13 03:22 14K 
[ ]MergeBarcodes.class2020-06-13 03:22 14K 
[TXT]MakePolymers.java2020-06-13 03:22 4.8K 
[ ]MakePolymers.class2020-06-13 03:22 5.9K 
[TXT]MakeLengthHistogram.java2020-06-13 03:22 7.5K 
[ ]MakeLengthHistogram.class2020-06-13 03:22 8.9K 
[ ]MakeLengthHistogram$1.class2020-06-13 03:22 423  
[TXT]MakeContaminatedGenomes.java2020-06-13 03:22 10K 
[ ]MakeContaminatedGenomes.class2020-06-13 03:22 10K 
[TXT]MakeChimeras.java2020-06-13 03:22 9.3K 
[ ]MakeChimeras.class2020-06-13 03:22 9.7K 
[TXT]KmerSample.java2020-06-13 03:22 3.1K 
[ ]KmerSample.class2020-06-13 03:22 1.6K 
[TXT]KmerNormalize.java2020-06-13 03:22 133K 
[ ]KmerNormalize.class2020-06-13 03:22 92K 
[ ]KmerNormalize$ProcessThread.class2020-06-13 03:22 20K 
[ ]KmerNormalize$1.class2020-06-13 03:22 399  
[TXT]KmerFilterSetMaker.java2020-06-13 03:22 13K 
[ ]KmerFilterSetMaker.class2020-06-13 03:22 11K 
[TXT]KmerCoverage.java2020-06-13 03:22 39K 
[ ]KmerCoverage.class2020-06-13 03:22 28K 
[ ]KmerCoverage$ProcessThread.class2020-06-13 03:22 7.7K 
[ ]KmerCoverage$1.class2020-06-13 03:22 395  
[TXT]KmerCountMulti.java2020-06-13 03:22 15K 
[ ]KmerCountMulti.class2020-06-13 03:22 12K 
[ ]KmerCountMulti$ProcessThread.class2020-06-13 03:22 2.5K 
[TXT]KmerCountExact.java2020-06-13 03:22 17K 
[ ]KmerCountExact.class2020-06-13 03:22 16K 
[ ]KmerCountExact$MakeKhistThread.class2020-06-13 03:22 949  
[ ]KmerCountExact$DumpKmersThread.class2020-06-13 03:22 897  
[TXT]KeepBestCopy.java2020-06-13 03:22 8.0K 
[ ]KeepBestCopy.class2020-06-13 03:22 9.6K 
[TXT]Info.java2020-06-13 03:22 5.8K 
[ ]Info.class2020-06-13 03:22 5.6K 
[TXT]IdentityMatrix.java2020-06-13 03:22 8.9K 
[ ]IdentityMatrix.class2020-06-13 03:22 10K 
[ ]IdentityMatrix$ProcessThread.class2020-06-13 03:22 4.2K 
[TXT]GreedyBarCodeFinder.java2020-06-13 03:22 2.3K 
[ ]GreedyBarCodeFinder.class2020-06-13 03:22 3.4K 
[TXT]GradeMergedReads.java2020-06-13 03:22 8.0K 
[ ]GradeMergedReads.class2020-06-13 03:22 8.5K 
[TXT]GetReads.java2020-06-13 03:22 9.6K 
[ ]GetReads.class2020-06-13 03:22 11K 
[TXT]GatherKapaStats.java2020-06-13 03:22 22K 
[ ]GatherKapaStats.class2020-06-13 03:22 15K 
[ ]GatherKapaStats$Well.class2020-06-13 03:22 4.3K 
[ ]GatherKapaStats$TagData.class2020-06-13 03:22 3.4K 
[ ]GatherKapaStats$Plate.class2020-06-13 03:22 3.9K 
[ ]GatherKapaStats$KapaEntry.class2020-06-13 03:22 1.7K 
[TXT]FuseSequence.java2020-06-13 03:22 5.5K 
[ ]FuseSequence.class2020-06-13 03:22 7.0K 
[TXT]FungalRelease.java2020-06-13 03:22 15K 
[ ]FungalRelease.class2020-06-13 03:22 12K 
[TXT]FindString.java2020-06-13 03:22 492  
[ ]FindString.class2020-06-13 03:22 1.0K 
[TXT]FindPrimers_old.java2020-06-13 03:22 8.3K 
[ ]FindPrimers_old.class2020-06-13 03:22 9.8K 
[TXT]FindPrimers.java2020-06-13 03:22 20K 
[ ]FindPrimers.class2020-06-13 03:22 11K 
[ ]FindPrimers$ProcessThread.class2020-06-13 03:22 7.7K 
[TXT]FindHiCJunctions.java2020-06-13 03:22 15K 
[ ]FindHiCJunctions.class2020-06-13 03:22 15K 
[TXT]FilterReadsWithSubs.java2020-06-13 03:22 3.4K 
[ ]FilterReadsWithSubs.class2020-06-13 03:22 3.6K 
[TXT]FilterBySequence.java2020-06-13 03:22 23K 
[ ]FilterBySequence.class2020-06-13 03:22 13K 
[ ]FilterBySequence$ProcessThread.class2020-06-13 03:22 3.2K 
[ ]FilterBySequence$LoadThread.class2020-06-13 03:22 3.2K 
[ ]FilterBySequence$Code.class2020-06-13 03:22 1.7K 
[TXT]FilterByCoverage.java2020-06-13 03:22 15K 
[ ]FilterByCoverage.class2020-06-13 03:22 16K 
[TXT]FakeReads.java2020-06-13 03:22 10K 
[ ]FakeReads.class2020-06-13 03:22 10K 
[TXT]Difference.java2020-06-13 03:22 714  
[ ]Difference.class2020-06-13 03:22 1.6K 
[TXT]DemuxByName2.java2020-06-13 03:22 36K 
[ ]DemuxByName2.class2020-06-13 03:22 25K 
[TXT]DemuxByName.java2020-06-13 03:22 19K 
[ ]DemuxByName.class2020-06-13 03:22 19K 
[TXT]DedupeProtein.java2020-06-13 03:22 161K 
[ ]DedupeProtein.class2020-06-13 03:22 65K 
[ ]DedupeProtein$UnitOffsetComparator.class2020-06-13 03:22 1.0K 
[ ]DedupeProtein$Unit.class2020-06-13 03:22 27K 
[ ]DedupeProtein$Overlap.class2020-06-13 03:22 14K 
[ ]DedupeProtein$MstThread.class2020-06-13 03:22 4.6K 
[ ]DedupeProtein$HashThread.class2020-06-13 03:22 19K 
[ ]DedupeProtein$ClusterThread.class2020-06-13 03:22 21K 
[ ]DedupeProtein$ClusterLengthComparator.class2020-06-13 03:22 1.3K 
[TXT]DedupeByMapping.java2020-06-13 03:22 13K 
[ ]DedupeByMapping.class2020-06-13 03:22 13K 
[ ]DedupeByMapping$Quad.class2020-06-13 03:22 1.8K 
[TXT]Dedupe2.java2020-06-13 03:22 192K 
[ ]Dedupe2.class2020-06-13 03:22 66K 
[ ]Dedupe2$UnitOffsetComparator.class2020-06-13 03:22 1.0K 
[ ]Dedupe2$Unit.class2020-06-13 03:22 36K 
[ ]Dedupe2$Overlap.class2020-06-13 03:22 16K 
[ ]Dedupe2$MstThread.class2020-06-13 03:22 4.4K 
[ ]Dedupe2$HashThread.class2020-06-13 03:22 19K 
[ ]Dedupe2$ClusterThread.class2020-06-13 03:22 27K 
[ ]Dedupe2$ClusterLengthComparator.class2020-06-13 03:22 1.2K 
[TXT]Dedupe.java2020-06-13 03:22 198K 
[ ]Dedupe.class2020-06-13 03:22 68K 
[ ]Dedupe$UnitOffsetComparator.class2020-06-13 03:22 1.0K 
[ ]Dedupe$Unit.class2020-06-13 03:22 38K 
[ ]Dedupe$Overlap.class2020-06-13 03:22 16K 
[ ]Dedupe$MstThread.class2020-06-13 03:22 4.4K 
[ ]Dedupe$HashThread.class2020-06-13 03:22 20K 
[ ]Dedupe$ClusterThread.class2020-06-13 03:22 27K 
[ ]Dedupe$ClusterLengthComparator.class2020-06-13 03:22 1.2K 
[TXT]DecontaminateByNormalization.java2020-06-13 03:22 23K 
[ ]DecontaminateByNormalization.class2020-06-13 03:22 22K 
[TXT]CutPrimers.java2020-06-13 03:22 6.9K 
[ ]CutPrimers.class2020-06-13 03:22 8.4K 
[TXT]CrossContaminate.java2020-06-13 03:22 14K 
[ ]CrossContaminate.class2020-06-13 03:22 14K 
[ ]CrossContaminate$Vessel.class2020-06-13 03:22 1.7K 
[TXT]CoveragePileup.java2020-06-13 03:22 76K 
[ ]CoveragePileup.class2020-06-13 03:22 56K 
[TXT]CovStatsLine.java2020-06-13 03:22 5.5K 
[ ]CovStatsLine.class2020-06-13 03:22 5.0K 
[TXT]CountUniqueness.java2020-06-13 03:22 3.1K 
[ ]CountUniqueness.class2020-06-13 03:22 4.9K 
[TXT]CountGC.java2020-06-13 03:22 11K 
[ ]CountGC.class2020-06-13 03:22 10K 
[ ]CountGC$1.class2020-06-13 03:22 375  
[TXT]CountBarcodes.java2020-06-13 03:22 12K 
[ ]CountBarcodes.class2020-06-13 03:22 14K 
[TXT]CorrelateBarcodes.java2020-06-13 03:22 13K 
[ ]CorrelateBarcodes.class2020-06-13 03:22 13K 
[TXT]Consect.java2020-06-13 03:22 13K 
[ ]Consect.class2020-06-13 03:22 11K 
[TXT]CallPeaks.java2020-06-13 03:22 33K 
[ ]CallPeaks.class2020-06-13 03:22 26K 
[ ]CallPeaks$Peak.class2020-06-13 03:22 4.1K 
[TXT]CalcUniqueness.java2020-06-13 03:22 20K 
[ ]CalcUniqueness.class2020-06-13 03:22 15K 
[ ]CalcUniqueness$Counter.class2020-06-13 03:22 3.2K 
[TXT]CalcTrueQuality.java2020-06-13 03:22 66K 
[ ]CalcTrueQuality.class2020-06-13 03:22 31K 
[ ]CalcTrueQuality$Worker.class2020-06-13 03:22 9.3K 
[ ]CalcTrueQuality$GBMatrixSet.class2020-06-13 03:22 4.5K 
[ ]CalcTrueQuality$CountMatrixSet.class2020-06-13 03:22 12K 
[TXT]BBQC.java2020-06-13 03:22 38K 
[ ]BBQC.class2020-06-13 03:22 32K 
[TXT]BBMergeOverlapper.java2020-06-13 03:22 33K 
[ ]BBMergeOverlapper.class2020-06-13 03:22 19K 
[TXT]BBMerge.java2020-06-13 03:22 100K 
[ ]BBMerge.class2020-06-13 03:22 58K 
[ ]BBMerge$MateThread.class2020-06-13 03:22 25K 
[TXT]BBMask.java2020-06-13 03:22 36K 
[ ]BBMask.class2020-06-13 03:22 32K 
[ ]BBMask$MaskSamThread.class2020-06-13 03:22 633  
[ ]BBMask$MaskRepeatThread.class2020-06-13 03:22 1.3K 
[ ]BBMask$MaskLowEntropyThread.class2020-06-13 03:22 1.6K 
[TXT]BBDuk2.java2020-06-13 03:22 133K 
[ ]BBDuk2.class2020-06-13 03:22 62K 
[ ]BBDuk2$ProcessThread.class2020-06-13 03:22 31K 
[ ]BBDuk2$LoadThread.class2020-06-13 03:22 7.6K 
[TXT]BBDuk.java2020-06-13 03:22 175K 
[ ]BBDuk.class2020-06-13 03:22 72K 
[ ]BBDuk$ProcessThread.class2020-06-13 03:22 42K 
[ ]BBDuk$LoadThread.class2020-06-13 03:22 7.8K 
[TXT]AssemblyStatsWrapper.java2020-06-13 03:22 1.6K 
[ ]AssemblyStatsWrapper.class2020-06-13 03:22 2.5K 
[TXT]AssemblyStats2.java2020-06-13 03:22 67K 
[ ]AssemblyStats2.class2020-06-13 03:22 48K 
[ ]AssemblyStats2$Triple.class2020-06-13 03:22 2.0K 
[TXT]AdjustHomopolymers.java2020-06-13 03:22 16K 
[ ]AdjustHomopolymers.class2020-06-13 03:22 12K 
[TXT]AddAdapters.java2020-06-13 03:22 24K 
[ ]AddAdapters.class2020-06-13 03:22 20K 
Apache/2.4.41 (Ubuntu) Server at 95.111.247.186 Port 80