Binary alignment (BAM), FASTA, variant call (BCF), and tabix
file import
Martin Morgan, Herv\'e Pag\`es, Valerie Obenchain, Nathaniel
    Hayden
This package provides an interface to the 'samtools',
    'bcftools', and 'tabix' utilities for manipulating SAM (Sequence
    Alignment / Map), FASTA, binary variant call (BCF) and compressed
    indexed tab-delimited (tabix) files.
methods, GenomeInfoDb (>= 1.1.3), GenomicRanges (>= 1.31.8),
Biostrings (>= 2.47.6)
utils, BiocGenerics (>= 0.25.1), S4Vectors (>= 0.17.25),
IRanges (>= 2.13.12), XVector (>= 0.19.7), zlibbioc, bitops,
BiocParallel, stats
GenomicAlignments, ShortRead (>= 1.19.10), GenomicFeatures,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, KEGG.db,
TxDb.Hsapiens.UCSC.hg18.knownGene, RNAseqData.HNRNPC.bam.chr14,
BSgenome.Hsapiens.UCSC.hg19, RUnit, BiocStyle
Rhtslib (>= 1.17.7), S4Vectors, IRanges, XVector, Biostrings
DataImport, Sequencing, Coverage, Alignment, QualityControl